| Group A | FC | Match | Win | Draw | Lose | Goal | GA | GF | Point |
| 1 | Tokyo | 6 | 3 | 3 | 0 | 8 | 4 | 4 | 12 |
| 2 | Albirex Niigata Japan | 6 | 3 | 2 | 1 | 9 | 4 | 5 | 11 |
| 3 | Sanfrecce Hiroshima | 6 | 2 | 3 | 1 | 9 | 6 | 3 | 9 |
| 4 | Shonan Bellmare | 6 | 2 | 3 | 1 | 5 | 5 | 0 | 9 |
| 5 | Sagan Tosu | 6 | 2 | 2 | 2 | 3 | 4 | -1 | 8 |
| 6 | Matsumoto Yamaga FC | 6 | 1 | 1 | 4 | 8 | 13 | -5 | 4 |
| 7 | Ventforet Kofu | 6 | 0 | 2 | 4 | 4 | 10 | -6 | 2 |
| Group B | FC | Match | Win | Draw | Lose | Goal | GA | GF | Point |
| 1 | Nagoya Grampus Eight | 6 | 4 | 1 | 1 | 12 | 11 | 1 | 13 |
| 2 | Vissel Kobe | 6 | 3 | 2 | 1 | 11 | 5 | 6 | 11 |
| 3 | Kawasaki Frontale | 6 | 2 | 3 | 1 | 7 | 6 | 1 | 9 |
| 4 | Yamagata Montedio | 6 | 2 | 2 | 2 | 10 | 11 | -1 | 8 |
| 5 | Yokohama F Marinos | 6 | 2 | 0 | 4 | 7 | 7 | 0 | 6 |
| 6 | Shimizu S-Pulse | 6 | 2 | 0 | 4 | 6 | 11 | -5 | 6 |
| 7 | Vegalta Sendai | 6 | 1 | 2 | 3 | 6 | 8 | -2 | 5 |